| [1] | Olivier Dameron, Pascal van Hille, Lynda Temal, Arnaud Rosier, Louise Deléger, Cyril Grouin, Pierre Zweigenbaum, and Anita Burgun. Comparison of OWL and SWRL-based ontology modeling strategies for the determination of pacemaker alerts severity. In Proceedings of the American Medical Informatics Association Conference AMIA, 2011. [ bib ] |
| [2] | Charles Bettembourg, Christian Diot, and Olivier Dameron. Cross-species metabolic pathways comparison: Focus on mouse, human and chicken lipid metabolism. In Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2011), 2011. In press. [ bib ] |
| [3] | Marc Cuggia, Jean-Charles Dufour, Paolo Besana, Olivier Dameron, Regis Duvauferrier, Dominique Fieschi, Catherine Bohec, Annabel Bourdé, Laurent Charlois, Cyril Garde, Isabelle Gibaud, Jean-Francois Laurent, Oussama Zekri, and Marius Fieschi. ASTEC: A system for automatic selection of clinical trials. In Proceedings of the American Medical Informatics Association Conference AMIA, 2011. In press. [ bib ] |
| [4] | Cyril Grouin, Louise Deléger, Arnaud Rosier, Lynda Temal, Olivier Dameron, Pascal van Hille, Anita Burgun, and Pierre Zweigenbaum. Automatic computation of CHA2DS2-VASc score: Information extraction from clinical texts for thromboembolism risk assessment. In Proceedings of the American Medical Informatics Association Conference AMIA, 2011. In press. [ bib | .pdf ] |
| [5] | Anita Burgun, Lynda Temal, Arnaud Rosier, Olivier Dameron, Philippe Mabo, Pierre Zweigenbaum, Regis Beuscart, David Delerue, and Henry Christine. Integrating clinical data with information transmitted by implantable cardiac defibrillators to support medical decision in telecardiology: the application ontology of the AKENATON project. In Proceedings of the American Medical Informatics Association Conference AMIA, page 992, 2010. [ bib ] |
| [6] | Anita Burgun, Arnaud Rosier, Lynda Temal, Olivier Dameron, Philippe Mabo, Pierre Zweigenbaum, Régis Beuscart, David Delerue, and Christine Henry. Supporting medical decision in telecardiology: a patient-centered ontology-based approach. In Medinfo 2010, 2010. In press. [ bib ] |
| [7] | Lynda Temal, Arnaud Rosier, Olivier Dameron, and Anita Burgun. Mapping BFO and DOLCE. Studies in health technology and informatics, 160:1065-1069, 2010. [ bib ] |
| [8] | Nicolas Lebreton, Christophe Blanchet, Daniela Barreiro Claro, Julie Chabalier, Anita Burgun, and Olivier Dameron. Verification of parameters semantic compatibility for semi-automatic web service composition: a generic case study. In 12th International Conference on Information Integration and Web-based Applications and Services (iiWAS2010), 2010. In press. [ bib ] |
| [9] | Amrapali Zaveri, Luciana Cofiel, Jatin Shah, Shreyasee Pradhan, Edwin Chan, Olivier Dameron, Ricardo Pietrobon, and Beng Ti Ang. Achieving high research reporting quality through the use of computational ontologies. Neuroinformatics, 8(4):261-271, 2010. [ bib | .pdf ] |
| [10] | Olivier Dameron, Charles Bettembourg, and Léa Joret. Quantitative cross-species comparison of GO annotations: advantages and limitations of semantic similarity measure. In 11th International Protégé Conference, 2009. [ bib | .pdf ] |
| [11] | Cyril Grouin, Arnaud Rosier, Olivier Dameron, and Pierre Zweigenbaum. Une procédure d'anonymisation à deux niveaux pour créer un corpus de comptes rendus hospitaliers. In Journée Francophones d'Informatique Médicale, 2009. [ bib | .pdf ] |
| [12] | Cyril Grouin, Arnaud Rosier, Olivier Dameron, and Pierre Zweigenbaum. Testing tactics to localize de-identification. In Proceedings of the Medical Informatics in Europe conference (MIE'2009), 2009. [ bib ] |
| [13] | Cyril Grouin, Arnaud Rosier, Olivier Dameron, and Pierre Zweigenbaum. Testing tactics to localize de-identification. Studies in health technology and informatics, 150:735-739, 2009. [ bib ] |
| [14] | Cyril Grouin, Arnaud Rosier, Olivier Dameron, and Pierre Zweigenbaum. Risques, technologies de l'information pour les pratiques médicales, volume XVII, chapter Une procédure d'anonymisation à deux niveaux pour créer un corpus de comptes-rendus hospitaliers. Springer-Verlag France, 2009. [ bib | .pdf ] |
| [15] | Nicolas Lebreton, Christophe Blanchet, Julie Chabalier, and Olivier Dameron. Utilisation d'ontologies de tâches et de domaine pour la composition semi-automatique de services web bioinformatiques. In Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM 2009), 2009. [ bib ] |
| [16] | Lynda Temal, Arnaud Rosier, Olivier Dameron, and Anita Burgun. Modeling cardiac rhythm and heart rate using BFO and DOLCE. In International Conference for Biomedical Ontologies, 2009. [ bib | .pdf ] |
| [17] | Olivier Dameron and Julie Chabalier. Bio-ontologies tutorial. In A. Bairoch, S. Cohen-Boulakia, and Froidevaux C., editors, Proceedings of the Data Integration In Life Science conference DILS, volume 5109 of LNBI, page 208, 2008. [ bib ] |
| [18] | Elena Beisswanger, Vivian Lee, Jung-Jae Kim, Dietrich Rebholz-Schuhmann, Andrea Splendiani, Olivier Dameron, Stefan Schulz, and Udo Hahn. Gene Regulation Ontology (GRO): design principles and use cases. In Studies in Health technology and informatics - Proceedings of the Medical Informatics in Europe conference (MIE'08), volume 136, pages 9-14, 2008. [ bib | .pdf ] |
| [19] | Nicolas Lebreton, Olivier Dameron, Christophe Blanchet, and Julie Chabalier. Utilisation d'ontologies de tâches et de domaine pour la composition semi-automatique de services web bioinformatiques. In Proceedings of the Journées Ouvertes de Biologie, Informatique et mathématiques (Jobim 2008), 2008. [ bib ] |
| [20] | Élodie Roques, Julie Chabalier, and Olivier Dameron. Enrichissement sémantique de patrons syntaxiques pour l'amélioration du mapping entre voies métaboliques et processus biologiques. In Proceedings of the Journées Ouvertes de Biologie, Informatique et mathématiques (Jobim 2008), 2008. [ bib ] |
| [21] | Olivier Dameron, Mark A. Musen, and Bernard Gibaud. Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy. Artificial Intelligence in Medicine, 39(3):217-225, 2007. [ bib | .pdf ] |
| [22] | Olivier Dameron and Julie Chabalier. Automatic generation of consistency constraints for an OWL representation of the FMA. In 10th International Protégé Conference, 2007. [ bib | .pdf ] |
| [23] | V Bertaud, I Belhadj, O Dameron, N Garcelon, L Hendaoui, F Marin, and R Duvauferrier. L'informatisation du signe radiologique. Journal de Radiologie, 88(1):27-37, 2007. [ bib ] |
| [24] | Julie Chabalier, Olivier Dameron, and Anita Burgun. Integrating disease and pathway ontologies. In Proceedings of the ISMB conference, Poster Session, 2007. [ bib ] |
| [25] | Julie Chabalier, Olivier Dameron, and Anita Burgun. Integrating and querying disease and pathway ontologies: building an OWL model and using RDFS queries. In Bio-Ontologies Special Interest Group, Intelligent Systems for Molecular Biology conference (ISMB'07), 2007. [ bib ] |
| [26] | Julie Chabalier, Olivier Dameron, and Anita Burgun. Using knowledge about pathways as an organizing principle for disease ontologies. In Journées Ouvertes Biologie, Informatique et Mathématiques (JOBIM'07), 2007. [ bib ] |
| [27] | Gwenaëlle Marquet, Olivier Dameron, Stephan Saikali, Jean Mosser, and Anita Burgun. Grading glioma tumors using OWL-DL and NCI thesaurus. In Proceedings of the American Medical Informatics Association Conference AMIA'07, pages 508-512, 2007. [ bib ] |
| [28] | Andrea Splendiani, Elena Beisswanger, Jung-Jae Kim, Vivian Lee, Olivier Dameron, and Dietrich Rebholz-Schuhmann. Bio-ontologies in the context of the BOOTStrep project. In Proceedings of the Bio-Ontologies SIG Workshop ISMB, (poster), 2007. [ bib ] |
| [29] | Olivier Dameron, Élodie Roques, Daniel L. Rubin, Gwenaëlle Marquet, and Anita Burgun. Grading lung tumors using OWL-DL based reasoning. In 9th International Protégé Conference, 2006. [ bib | .pdf ] |
| [30] | Daniel L. Rubin, Olivier Dameron, Yasser Bashir, David Grossman, Parvati Dev, and Mark A. Musen. Using ontologies linked with geometric models to reason about penetrating injuries. Artificial Intelligence in Medicine, 37(3):167-176, 2006. [ bib | .pdf ] |
| [31] | Julie Chabalier, Gwenaëlle Marquet, Olivier Dameron, and Anita Burgun. Enrichissement de la hiérarchie KEGG par l'exploitation de Gene Ontology. In Workshop OGSB, JOBIM'06, 2006. [ bib ] |
| [32] | Olivier Dameron, Daniel L. Rubin, and Mark A. Musen. Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study. In American Medical Informatics Association Conference AMIA05, pages 181-185, 2005. [ bib | .pdf ] |
| [33] | Olivier Dameron. Keeping modular and platform-independent software up-to-date: benefits from the Semantic Web. In 8th International Protégé Conference, 2005. [ bib | .pdf ] |
| [34] | Bernard Gibaud, Olivier Dameron, Éric Poiseau, and Pierre Jannin. Implementation of atlas-matching capabilities using Web Services technology: lessons learned from the development of a demonstrator. In Computer Assisted Radiology and Surgery 2005, 2005. [ bib ] |
| [35] | Christine Golbreich, Olivier Bierlaire, Olivier Dameron, and Bernard Gibaud. Use case: Ontology with rules for identifying brain anatomical structures. In W3C Workshop on Rule Languages for Interoperability, 2005. [ bib ] |
| [36] | Christine Golbreich, Olivier Bierlaire, Olivier Dameron, and Bernard Gibaud. What reasoning support for ontology and rules? the brain anatomy case study. In 8th International Protégé Conference, workshop on Protégé and rules, 2005. [ bib ] |
| [37] | Daniel L. Rubin, Olivier Dameron, and Mark A. Musen. Using OWL and Description Logics based classification for reasoning in biomedical applications. In 8th International Protégé Conference, 2005. [ bib ] |
| [38] | Daniel L. Rubin, Olivier Dameron, and Mark A. Musen. Use of description logic classification to reason about consequences of penetrating injuries. In American Medical Informatics Association Conference AMIA05, pages 649-653, 2005. [ bib | .pdf ] |
| [39] | Olivier Dameron, Bernard Gibaud, and Xavier Morandi. Numeric and symbolic representation of the cerebral cortex anatomy: Methods and preliminary results. Surgical and Radiologic Anatomy, 26(3):191-197, 2004. [ bib | .pdf ] |
| [40] | Olivier Dameron, Bernard Gibaud, and Mark Musen. Using semantic dependencies for consistency management of an ontology of brain-cortex anatomy. In First International Workshop on Formal Biomedical Knowledge Representation KRMED04, pages 30-38, 2004. [ bib | .pdf ] |
| [41] | Olivier Dameron and Mark A. Musen. Accessing and manipulating life-sciences ontologies using web services. In W3C Workshop on Semantic Web for Life Sciences, 2004. [ bib | .pdf ] |
| [42] | Olivier Dameron, Natalya F. Noy, Holger Knublauch, and Mark A. Musen. Accessing and manipulating ontologies using web services. In Proceeding of the Third International Semantic Web Conference (ISWC2004), Semantic Web Services workshop, 2004. [ bib | .pdf ] |
| [43] | Olivier Dameron. JOT: a scripting environment for creating and managing ontologies. In 7th International Protégé Conference, 2004. [ bib | .pdf ] |
| [44] | Olivier Dameron. Using the JOT plugin for reasoning with Protégé. In Workshop on Protégé and Reasoning - 7th International Protégé Conference, 2004. [ bib ] |
| [45] | Christian Barillot, Romain Valabregue, Jean-Pierre Matsumoto, Florent Aubry, Habib Benali, Yann Cointepas, Olivier Dameron, Michel Dojat, E. Duchesnay, Bernard Gibaud, Serge Kinkingnéhun, Dimitri Papadopoulos, Mélanie Pellegrini-Issac, and Éric Simon. Neurobase: Management of distributed and heterogeneous information sources in neuroimaging. In M. Dojat and B. Gibaud, editors, Didamic Workshop, MICCAI 2004 Conference, pages 85-94, 2004. [ bib | .pdf ] |
| [46] | Bernard Gibaud, Michel Dojat, Habib Benali, Olivier Dameron, Jean-Pierre Matsumoto, Mélanie Pellegrini-Issac, Romain Valabregue, and Christian Barillot. Toward an ontology for sharing neuroimaging data and processing methods: Experience learned from the development of a demonstrator. In M. Dojat and B. Gibaud, editors, Didamic Workshop, MICCAI 2004 Conference, pages 15-23, 2004. [ bib | .pdf ] |
| [47] | Holger Knublauch, Olivier Dameron, and Mark Musen. Weaving the biomedical semantic web with the Protégé OWL plugin. In First International Workshop on Formal Biomedical Knowledge Representation KRMED04, pages 39-47, 2004. [ bib | .pdf ] |
| [48] | D.L. Rubin, O. Dameron, Y. Bashir, D. Grossman, P. Dev, and M.A. Musen. Using ontologies linked with geometric models to reason about penetrating injuries. In Intelligent Data Analysis in Medicine and Pharmacology IDAMAP04, 2004. [ bib | .pdf ] |
| [49] | Olivier Dameron, Anita Burgun, Xavier Morandi, and Bernard Gibaud. Modelling dependencies between relations to insure consistency of a cerebral cortex anatomy knowledge base. In MIE'03 Proceedings, pages 403-408, 2003. [ bib ] |
| [50] | Bernard Gibaud, Olivier Dameron, and Xavier Morandi. Re-use of a multi-purpose knowledge corpus on cortex anatomy for educational purposes. In MIE'03 Proceedings, pages 439-444, 2003. [ bib ] |
| [51] | Olivier Dameron, Anita Burgun, Xavier Morandi, and Bernard Gibaud. Ontologie stratifiée de l'anatomie du cortex cérébral : application au maintien de la cohérence. In Journée Web Sémantique, Rennes, 2003. [ bib ] |
| [52] | Christine Golbreich, Olivier Dameron, Bernard Gibaud, and Anita Burgun. Web ontology language requirements w.r.t expressiveness of taxononomy and axioms in medecine. In International Semantic Web Conference ISWC03 proceedings, volume 2870 of Lecture Notes in Computer Science. Springer, 2003. [ bib | .pdf ] |
| [53] | Christine Golbreich, Olivier Dameron, Bernard Gibaud, and Anita Burgun. How to represent ontologies in view of a medical semantic web ? In AIME 03 Conference Proceedings, pages 51-60, 2003. [ bib ] |
| [54] | Christine Golbreich, Olivier Dameron, Bernard Gibaud, and Anita Burgun. Comment représenter les ontologies pour tendre vers un web sémantique médical ? In Journées Francaises de la Toile, 2003. [ bib ] |
| [55] | Olivier Dameron, Bernard Gibaud, Anita Burgun, and Xavier Morandi. Towards a sharable numeric and symbolic knowledge base on cerebral cortex anatomy: lessons from a prototype. In American Medical Informatics Association AMIA, pages 185-189. Hanley and Belfus, 2002. [ bib | .pdf ] |
| [56] | JJ Levrel, B Carsin-Nicol, C Ouail-Tabourel, E Chabert, P Darnault, B Gibaud, O Dameron, and X Morandi. Electronic imaging with photo-realistic rendering for neuroanatomy teaching: methods and preliminary results. Journal of Neuroradiology, 2002. [ bib ] |
| [57] | Olivier Dameron, Bernard Gibaud, and Xavier Morandi. Numeric and symbolic knowledge representation of cortex anatomy using web technologies. In Silvana Quaglini, Pedro Barahona, and Steen Andreassen, editors, Artificial Intelligence Medicine, 8th Conference on AI in Medicine in Europe, AIME 2001, Cascais, Portugal, July 1-4, 2001, Proceedings, volume 2101 of Lecture Notes in Computer Science, pages 359-68. Springer, 2001. [ bib ] |
| [58] | Bernard Gibaud, Olivier Dameron, and Xavier Morandi. Representation and sharing of numeric and symbolic knowledge about brain cortex anatomy using web technology. In HU Lemke, MW Vannier, K Inamura, AG Farman, and K Doi, editors, Computer Assisted Radiology and Surgery 2001, pages 356-361. Elsevier, 2001. [ bib ] |
| [59] | Olivier Dameron, Bernard Gibaud, and Xavier Morandi. Représentation de connaissances numériques et symboliques sur l'anatomie du cortex cérébral par des technologies du web. In Forum du Jeune Chercheur Compiègne, 2001. [ bib ] |
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